PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds (English)
- New search for: Chen, Yangho
- New search for: Souaiaia, Tade
- New search for: Chen, Ting
- New search for: Chen, Yangho
- New search for: Souaiaia, Tade
- New search for: Chen, Ting
In:
Bioinformatics
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25
, 19
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2514-
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2009
- Article (Journal) / Electronic Resource
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Title:PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
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Contributors:
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Published in:Bioinformatics ; 25, 19 ; 2514-
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Publisher:
- New search for: Oxford University Press
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Publication date:2009-10-01
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 25, Issue 19
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 2455
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Upcoming challenges for multiple sequence alignment methods in the high-throughput eraKemena, Carsten / Notredame, Cedric et al. | 2009
- 2466
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Network analyses in systems pharmacologyBerger, Seth I. / Iyengar, Ravi et al. | 2009
- 2473
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Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogasterMarco, Antonio / Konikoff, Charlotte / Karr, Timothy L. / Kumar, Sudhir et al. | 2009
- 2478
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An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactionsMiller, David J. / Zhang, Yanxin / Yu, Guoqiang / Liu, Yongmei / Chen, Li / Langefeld, Carl D. / Herrington, David / Wang, Yue et al. | 2009
- 2486
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Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replicationKim, Youngchul / Bekiranov, Stefan / Lee, Jae K. / Park, Taesung et al. | 2009
- 2492
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Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networksLiu, Mei / Chen, Xue-wen / Jothi, Raja et al. | 2009
- 2500
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Benchmarking homology detection procedures with low complexity filtersForslund, Kristoffer / Sonnhammer, Erik LL et al. | 2009
- 2506
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A new method for revealing correlated mutations under the structural and functional constraints in proteinsLee, Byung-Chul / Kim, Dongsup et al. | 2009
- 2514
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PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seedsChen, Yangho / Souaiaia, Tade / Chen, Ting et al. | 2009
- 2522
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A phylogenetic and Markov model approach for the reconstruction of mutational pathways of drug resistanceBuendia, Patricia / Cadwallader, Brice / DeGruttola, Victor et al. | 2009
- 2530
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Improving phylogenetic analyses by incorporating additional information from genetic sequence databasesLiang, Li-Jung / Weiss, Robert E. / Redelings, Benjamin / Suchard, Marc A. et al. | 2009
- 2537
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Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0Dehouck, Yves / Grosfils, Aline / Folch, Benjamin / Gilis, Dimitri / Bogaerts, Philippe / Rooman, Marianne et al. | 2009
- 2544
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FRODOCK: a new approach for fast rotational protein-protein dockingGarzon, José Ignacio / Lopéz-Blanco, José Ramón / Pons, Carles / Kovacs, Julio / Abagyan, Ruben / Fernandez-Recio, Juan / Chacon, Pablo et al. | 2009
- 2552
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Methyl side-chain dynamics prediction based on protein structureCarbonell, Pablo / Sol, Antonio del et al. | 2009
- 2559
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Efficient SCOP-fold classification and retrieval using index-based protein substructure alignmentsChi, Pin-Hao / Pang, Bin / Korkin, Dmitry / Shyu, Chi-Ren et al. | 2009
- 2566
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aGEM: an integrative system for analyzing spatial-temporal gene-expression informationJiménez-Lozano, Natalia / Segura, Joan / Macías, José Ramón / Vega, Juanjo / Carazo, José María et al. | 2009
- 2573
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Normalization of peak intensities in bottom-up MS-based proteomics using singular value decompositionKarpievitch, Yuliya V. / Taverner, Thomas / Adkins, Joshua N. / Callister, Stephen J. / Anderson, Gordon A. / Smith, Richard D. / Dabney, Alan R. et al. | 2009
- 2581
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Reconstructing spatiotemporal gene expression data from partial observationsCartwright, Dustin A. / Brady, Siobhan M. / Orlando, David A. / Sturmfels, Bernd / Benfey, Philip N. et al. | 2009
- 2588
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Testing the hypothesis of tissue selectivity: the intersection-union test and a Bayesian approachVan Deun, K. / Hoijtink, H. / Thorrez, L. / Van Lommel, L. / Schuit, F. / Van Mechelen, I. et al. | 2009
- 2595
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A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a caseSun, Jingchun / Jia, Peilin / Fanous, Ayman H. / Webb, Bradley T. / van den Oord, Edwin J.C.G. / Chen, Xiangning / Bukszar, Jozsef / Kendler, Kenneth S. / Zhao, Zhongming et al. | 2009
- 2603
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DiProGB: the dinucleotide properties genome browserFriedel, Maik / Nikolajewa, Swetlana / Sühnel, Jürgen / Wilhelm, Thomas et al. | 2009
- 2605
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CEAS: cis-regulatory element annotation systemShin, Hyunjin / Liu, Tao / Manrai, Arjun K. / Liu, X. Shirley et al. | 2009
- 2607
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ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence dataMorgan, Martin / Anders, Simon / Lawrence, Michael / Aboyoun, Patrick / Pagès, Hervé / Gentleman, Robert et al. | 2009
- 2609
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PineSAP--sequence alignment and SNP identification pipelineWegrzyn, Jill L. / Lee, Jennifer M. / Liechty, John / Neale, David B. et al. | 2009
- 2611
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PhyloDet: a scalable visualization tool for mapping multiple traits to large evolutionary treesLee, Bongshin / Nachmanson, Lev / Robertson, George / Carlson, Jonathan M. / Heckerman, David et al. | 2009
- 2613
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Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLiteHashimoto, Takehiro / de Hoon, Michiel J.L. / Grimmond, Sean M. / Daub, Carsten O. / Hayashizaki, Yoshihide / Faulkner, Geoffrey J. et al. | 2009
- 2615
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RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing dataCloonan, Nicole / Xu, Qinying / Faulkner, Geoffrey J. / Taylor, Darrin F. / Tang, Dave T. P. / Kolle, Gabriel / Grimmond, Sean M. et al. | 2009
- 2617
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Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networksClément-Ziza, Mathieu / Malabat, Christophe / Weber, Christian / Moszer, Ivan / Aittokallio, Tero / Letondal, Catherine / Rousseau, Sandrine et al. | 2009
- 2619
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metahdep: meta-analysis of hierarchically dependent gene expression studiesStevens, John R. / Nicholas, Gabriel et al. | 2009
- 2621
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R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChipsRitchie, Matthew E. / Carvalho, Benilton S. / Hetrick, Kurt N. / Tavaré, Simon / Irizarry, Rafael A. et al. | 2009
- 2624
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Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval developmentBonzanni, Nicola / Krepska, Elzbieta / Feenstra, K. Anton / Fokkink, Wan / Kielmann, Thilo / Bal, Henri / Heringa, Jaap et al. | 2009