The variant call format and VCFtools (English)
- New search for: Danecek, Petr
- New search for: Auton, Adam
- New search for: Abecasis, Goncalo
- New search for: Albers, Cornelis A.
- New search for: Banks, Eric
- New search for: DePristo, Mark A.
- New search for: Handsaker, Robert E.
- New search for: Lunter, Gerton
- New search for: Marth, Gabor T.
- New search for: Sherry, Stephen T.
- New search for: McVean, Gilean
- New search for: Durbin, Richard
- New search for: Danecek, Petr
- New search for: Auton, Adam
- New search for: Abecasis, Goncalo
- New search for: Albers, Cornelis A.
- New search for: Banks, Eric
- New search for: DePristo, Mark A.
- New search for: Handsaker, Robert E.
- New search for: Lunter, Gerton
- New search for: Marth, Gabor T.
- New search for: Sherry, Stephen T.
- New search for: McVean, Gilean
- New search for: Durbin, Richard
In:
Bioinformatics
;
27
, 15
;
2156-
;
2011
- Article (Journal) / Electronic Resource
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Title:The variant call format and VCFtools
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Contributors:Danecek, Petr ( author ) / Auton, Adam ( author ) / Abecasis, Goncalo ( author ) / Albers, Cornelis A. ( author ) / Banks, Eric ( author ) / DePristo, Mark A. ( author ) / Handsaker, Robert E. ( author ) / Lunter, Gerton ( author ) / Marth, Gabor T. ( author ) / Sherry, Stephen T. ( author )
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Published in:Bioinformatics ; 27, 15 ; 2156-
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Publisher:
- New search for: Oxford University Press
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Publication date:2011-08-01
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 27, Issue 15
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 2027
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Pathogen detection using short-RNA deep sequencing subtraction and assemblyIsakov, Ofer / Modai, Shira / Shomron, Noam et al. | 2011
- 2031
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Comparative studies of de novo assembly tools for next-generation sequencing technologiesLin, Yong / Li, Jian / Shen, Hui / Zhang, Lei / Papasian, Christopher J. / Deng, Hong–Wen et al. | 2011
- 2038
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Parent-specific copy number in paired tumor-normal studies using circular binary segmentationOlshen, Adam B. / Bengtsson, Henrik / Neuvial, Pierre / Spellman, Paul T. / Olshen, Richard A. / Seshan, Venkatraman E. et al. | 2011
- 2047
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A probabilistic method for the detection and genotyping of small indels from population-scale sequence dataBansal, Vikas / Libiger, Ondrej et al. | 2011
- 2054
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A tree-based approach for motif discovery and sequence classificationYan, Rui / Boutros, Paul C. / Jurisica, Igor et al. | 2011
- 2062
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Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical propertiesChen, Shu-An / Ou, Yu-Yen / Lee, Tzong-Yi / Gromiha, M. Michael et al. | 2011
- 2068
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Aligning short reads to reference alignments and treesBerger, Simon A. / Stamatakis, Alexandros et al. | 2011
- 2076
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Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templatesYang, Yuedong / Faraggi, Eshel / Zhao, Huiying / Zhou, Yaoqi et al. | 2011
- 2083
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Identification of cavities on protein surface using multiple computational approaches for drug binding site predictionZhang, Zengming / Li, Yu / Lin, Biaoyang / Schroeder, Michael / Huang, Bingding et al. | 2011
- 2089
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Robust biclustering by sparse singular value decomposition incorporating stability selectionSill, Martin / Kaiser, Sebastian / Benner, Axel / Kopp-Schneider, Annette et al. | 2011
- 2098
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A procedure to statistically evaluate agreement of differential expression for cross-species genomicsPounds, Stan / Gao, Cuilan Lani / Johnson, Robert A. / Wright, Karen D. / Poppleton, Helen / Finkelstein, David / Leary, Sarah E. S. / Gilbertson, Richard J. et al. | 2011
- 2104
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MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effectsWestra, Harm-Jan / Jansen, Ritsert C. / Fehrmann, Rudolf S. N. / te Meerman, Gerard J. / van Heel, David / Wijmenga, Cisca / Franke, Lude et al. | 2011
- 2112
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Enriching targeted sequencing experiments for rare disease allelesEdwards, Todd L. / Song, Zhuo / Li, Chun et al. | 2011
- 2119
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Varying coefficient model for gene-environment interaction: a non-linear lookMa, Shujie / Yang, Lijian / Romero, Roberto / Cui, Yuehua et al. | 2011
- 2127
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The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathwaysBeltrame, Luca / Calura, Enrica / Popovici, Razvan R. / Rizzetto, Lisa / Guedez, Damariz Rivero / Donato, Michele / Romualdi, Chiara / Draghici, Sorin / Cavalieri, Duccio et al. | 2011
- 2134
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Mathematical modeling of 16S ribosomal DNA amplification reveals optimal conditions for the interrogation of complex microbial communities with phylogenetic microarraysPaliy, Oleg / Foy, Brent D. et al. | 2011
- 2141
-
genBlastG: using BLAST searches to build homologous gene modelsShe, Rong / Chu, Jeffrey Shih-Chieh / Uyar, Bora / Wang, Jun / Wang, Ke / Chen, Nansheng et al. | 2011
- 2144
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False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regionsPickrell, Joseph K. / Gaffney, Daniel J. / Gilad, Yoav / Pritchard, Jonathan K. et al. | 2011
- 2147
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CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancerWong, Wing Chung / Kim, Dewey / Carter, Hannah / Diekhans, Mark / Ryan, Michael C. / Karchin, Rachel et al. | 2011
- 2149
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nucleR: a package for non-parametric nucleosome positioningFlores, Oscar / Orozco, Modesto et al. | 2011
- 2151
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RNASAlign: RNA Structural Alignment SystemWong, Thomas K. F. / Wan, Kwok-Lung / Hsu, Bay-Yuan / Cheung, Brenda W. Y. / Hon, Wing-Kai / Lam, Tak-Wah / Yiu, Siu-Ming et al. | 2011
- 2153
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mapDamage: testing for damage patterns in ancient DNA sequencesGinolhac, Aurelien / Rasmussen, Morten / Gilbert, M. Thomas P. / Willerslev, Eske / Orlando, Ludovic et al. | 2011
- 2156
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The variant call format and VCFtoolsDanecek, Petr / Auton, Adam / Abecasis, Goncalo / Albers, Cornelis A. / Banks, Eric / DePristo, Mark A. / Handsaker, Robert E. / Lunter, Gerton / Marth, Gabor T. / Sherry, Stephen T. et al. | 2011
- 2159
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SEAL: a distributed short read mapping and duplicate removal toolPireddu, Luca / Leo, Simone / Zanetti, Gianluigi et al. | 2011
- 2161
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The LabelHash Server and Tools for substructure-based functional annotationMoll, Mark / Bryant, Drew H. / Kavraki, Lydia E. et al. | 2011
- 2163
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Xwalk: computing and visualizing distances in cross-linking experimentsKahraman, Abdullah / Malmström, Lars / Aebersold, Ruedi et al. | 2011
- 2165
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PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs)Luna, Augustin / Sunshine, Margot L. / van Iersel, Martijn P. / Aladjem, Mirit I. / Kohn, Kurt W. et al. | 2011
- 2167
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JSBML: a flexible Java library for working with SBMLDräger, Andreas / Rodriguez, Nicolas / Dumousseau, Marine / Dörr, Alexander / Wrzodek, Clemens / Le Novère, Nicolas / Zell, Andreas / Hucka, Michael et al. | 2011
- 2169
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Response to "Comments on 'Bayesian variable selection for disease classification using gene expression data'"Song, Xin-Yuan / Lu, Zhao-Hua et al. | 2011
- 2171
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Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsimBalzer, Susanne / Malde, Ketil / Lanzén, Anders / Sharma, Animesh / Jonassen, Inge et al. | 2011