Polyester: simulating RNA-seq datasets with differential transcript expression (English)
- New search for: Frazee, Alyssa C.
- New search for: Jaffe, Andrew E.
- New search for: Langmead, Ben
- New search for: Leek, Jeffrey T.
- New search for: Frazee, Alyssa C.
- New search for: Jaffe, Andrew E.
- New search for: Langmead, Ben
- New search for: Leek, Jeffrey T.
In:
Bioinformatics
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31
, 17
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2778-
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2015
- Article (Journal) / Electronic Resource
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Title:Polyester: simulating RNA-seq datasets with differential transcript expression
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Contributors:Frazee, Alyssa C. ( author ) / Jaffe, Andrew E. ( author ) / Langmead, Ben ( author ) / Leek, Jeffrey T. ( author )
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Published in:Bioinformatics ; 31, 17 ; 2778-
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Publisher:
- New search for: Oxford University Press
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Publication date:2015-09-01
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 31, Issue 17
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 2761
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Using combined evidence from replicates to evaluate ChIP-seq peaksJalili, Vahid / Matteucci, Matteo / Masseroli, Marco / Morelli, Marco J. et al. | 2015
- 2770
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Data-dependent bucketing improves reference-free compression of sequencing readsPatro, Rob / Kingsford, Carl et al. | 2015
- 2778
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Polyester: simulating RNA-seq datasets with differential transcript expressionFrazee, Alyssa C. / Jaffe, Andrew E. / Langmead, Ben / Leek, Jeffrey T. et al. | 2015
- 2785
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RVD2: an ultra-sensitive variant detection model for low-depth heterogeneous next-generation sequencing dataHe, Yuting / Zhang, Fan / Flaherty, Patrick et al. | 2015
- 2794
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Phylesystem: a git-based data store for community-curated phylogenetic estimatesMcTavish, Emily Jane / Hinchliff, Cody E. / Allman, James F. / Brown, Joseph W. / Cranston, Karen A. / Holder, Mark T. / Rees, Jonathan A. / Smith, Stephen A. et al. | 2015
- 2801
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DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexesAmir, Naama / Cohen, Dan / Wolfson, Haim J. et al. | 2015
- 2808
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Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profilesLee, Seungmyung / Kim, Hanjoo / Tian, Siqi / Lee, Taehoon / Yoon, Sungroh / Das, Rhiju et al. | 2015
- 2816
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INPS: predicting the impact of non-synonymous variations on protein stability from sequenceFariselli, Piero / Martelli, Pier Luigi / Savojardo, Castrense / Casadio, Rita et al. | 2015
- 2822
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Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression dataPatrick, Ellis / Buckley, Michael / Müller, Samuel / Lin, David M. / Yang, Jean Y. H. et al. | 2015
- 2829
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INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experimentsde Pretis, Stefano / Kress, Theresia / Morelli, Marco J. / Melloni, Giorgio E. M. / Riva, Laura / Amati, Bruno / Pelizzola, Mattia et al. | 2015
- 2836
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Addressing false discoveries in network inferencePetri, Tobias / Altmann, Stefan / Geistlinger, Ludwig / Zimmer, Ralf / Küffner, Robert et al. | 2015
- 2844
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Genome-scale strain designs based on regulatory minimal cut setsMahadevan, Radhakrishnan / von Kamp, Axel / Klamt, Steffen et al. | 2015
- 2852
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BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity dataKähärä, Juhani / Lähdesmäki, Harri et al. | 2015
- 2860
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The SwissLipids knowledgebase for lipid biologyAimo, Lucila / Liechti, Robin / Hyka-Nouspikel, Nevila / Niknejad, Anne / Gleizes, Anne / Götz, Lou / Kuznetsov, Dmitry / David, Fabrice P.A. / van der Goot, F. Gisou / Riezman, Howard et al. | 2015
- 2867
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CiVi: circular genome visualization with unique features to analyze sequence elementsOvermars, Lex / van Hijum, Sacha A. F. T. / Siezen, Roland J. / Francke, Christof et al. | 2015
- 2870
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IonGAP: integrative bacterial genome analysis for Ion Torrent sequence dataBaez-Ortega, Adrian / Lorenzo-Diaz, Fabian / Hernandez, Mariano / Gonzalez-Vila, Carlos Ignacio / Roda-Garcia, Jose Luis / Colebrook, Marcos / Flores, Carlos et al. | 2015
- 2874
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Interactive analysis of large cancer copy number studies with Copy Number ExplorerNewman, Scott et al. | 2015
- 2877
-
kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genomeGardner, Shea N / Slezak, Tom / Hall, Barry G. et al. | 2015
- 2879
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Identification of C2H2-ZF binding preferences from ChIP-seq data using RCADENajafabadi, Hamed S. / Albu, Mihai / Hughes, Timothy R. et al. | 2015
- 2882
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Tax4Fun: predicting functional profiles from metagenomic 16S rRNA dataAßhauer, Kathrin P. / Wemheuer, Bernd / Daniel, Rolf / Meinicke, Peter et al. | 2015
- 2885
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BFC: correcting Illumina sequencing errorsLi, Heng et al. | 2015
- 2888
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pez: phylogenetics for the environmental sciencesPearse, William D. / Cadotte, Marc W. / Cavender-Bares, Jeannine / Ives, Anthony R. / Tucker, Caroline M. / Walker, Steve C. / Helmus, Matthew R. et al. | 2015
- 2891
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iFoldRNA v2: folding RNA with constraintsKrokhotin, Andrey / Houlihan, Kevin / Dokholyan, Nikolay V. et al. | 2015
- 2894
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PDBest: a user-friendly platform for manipulating and enhancing protein structuresGonçalves, Wellisson R. S. / Gonçalves-Almeida, Valdete M. / Arruda, Aleksander L. / Meira, Wagner / da Silveira, Carlos H. / Pires, Douglas E. V. / de Melo-Minardi, Raquel C. et al. | 2015
- 2897
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MemGen: a general web server for the setup of lipid membrane simulation systemsKnight, Christopher J. / Hub, Jochen S. et al. | 2015
- 2900
-
chipPCR: an R package to pre-process raw data of amplification curvesRödiger, Stefan / Burdukiewicz, Michał / Schierack, Peter et al. | 2015
- 2903
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ms-data-core-api: an open-source, metadata-oriented library for computational proteomicsPerez-Riverol, Yasset / Uszkoreit, Julian / Sanchez, Aniel / Ternent, Tobias / del Toro, Noemi / Hermjakob, Henning / Vizcaíno, Juan Antonio / Wang, Rui et al. | 2015
- 2906
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Gener: a minimal programming module for chemical controllers based on DNA strand displacementKahramanogulları, Ozan / Cardelli, Luca et al. | 2015
- 2909
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phylogeo: an R package for geographic analysis and visualization of microbiome dataCharlop-Powers, Zachary / Brady, Sean F. et al. | 2015
- 2912
-
GOplot: an R package for visually combining expression data with functional analysisWalter, Wencke / Sánchez-Cabo, Fátima / Ricote, Mercedes et al. | 2015
- 2915
-
HTT-DB: Horizontally transferred transposable elements databaseDotto, Bruno Reis / Carvalho, Evelise Leis / Silva, Alexandre Freitas / Duarte Silva, Luiz Fernando / Pinto, Paulo Marcos / Ortiz, Mauro Freitas / Wallau, Gabriel Luz et al. | 2015
- 2918
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'Flatten plus': a recent implementation in WSxM for biological researchGimeno, Alejandro / Ares, Pablo / Horcas, Ignacio / Gil, Adriana / Gómez-Rodríguez, José M. / Colchero, Jaime / Gómez-Herrero, Julio et al. | 2015