Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment (English)
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- New search for: Baek, Minkyung
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- New search for: Weng, Zhiping
- New search for: Guest, Johnathan D.
- New search for: Gowthaman, Ragul
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- New search for: Xu, Xianjin
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- New search for: Hou, Jie
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In:
Proteins: Structure, Function, and Bioinformatics
;
87
, 12
;
1200-1221
;
2019
- Article (Journal) / Electronic Resource
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Title:Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment
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Contributors:Lensink, Marc F. ( author ) / Brysbaert, Guillaume ( author ) / Nadzirin, Nurul ( author ) / Velankar, Sameer ( author ) / Chaleil, Raphaël A. G. ( author ) / Gerguri, Tereza ( author ) / Bates, Paul A. ( author ) / Laine, Elodie ( author ) / Carbone, Alessandra ( author ) / Grudinin, Sergei ( author )
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Published in:Proteins: Structure, Function, and Bioinformatics ; 87, 12 ; 1200-1221
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Publisher:
- New search for: John Wiley & Sons, Inc.
-
Publication date:2019-12-01
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Size:22 pages
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Keywords:
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Source:
Table of contents – Volume 87, Issue 12
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1007
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Issue Information ‐ Table of Content| 2019
- 1011
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Critical assessment of methods of protein structure prediction (CASP)—Round XIIIKryshtafovych, Andriy / Schwede, Torsten / Topf, Maya / Fidelis, Krzysztof / Moult, John et al. | 2019
- 1021
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CASP13 target classification into tertiary structure prediction categoriesKinch, Lisa N. / Kryshtafovych, Andriy / Monastyrskyy, Bohdan / Grishin, Nick V. et al. | 2019
- 1037
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Target highlights in CASP13: Experimental target structures through the eyes of their authorsLepore, Rosalba / Kryshtafovych, Andriy / Alahuhta, Markus / Veraszto, Harshul A. / Bomble, Yannick J. / Bufton, Joshua C. / Bullock, Alex N. / Caba, Cody / Cao, Hongnan / Davies, Owen R. et al. | 2019
- 1058
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Assessing the accuracy of contact predictions in CASP13Shrestha, Rojan / Fajardo, Eduardo / Gil, Nelson / Fidelis, Krzysztof / Kryshtafovych, Andriy / Monastyrskyy, Bohdan / Fiser, Andras et al. | 2019
- 1069
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Analysis of distance‐based protein structure prediction by deep learning in CASP13Xu, Jinbo / Wang, Sheng et al. | 2019
- 1092
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Prediction of interresidue contacts with DeepMetaPSICOV in CASP13Kandathil, Shaun M. / Greener, Joe G. / Jones, David T. et al. | 2019
- 1100
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A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessmentsAbriata, Luciano A. / Tamò, Giorgio E. / Dal Peraro, Matteo et al. | 2019
- 1113
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Evaluation of template‐based modeling in CASP13Croll, Tristan I. / Sammito, Massimo D. / Kryshtafovych, Andriy / Read, Randy J. et al. | 2019
- 1128
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Cryo‐electron microscopy targets in CASP13: Overview and evaluation of resultsKryshtafovych, Andriy / Malhotra, Sony / Monastyrskyy, Bohdan / Cragnolini, Tristan / Joseph, Agnel‐Praveen / Chiu, Wah / Topf, Maya et al. | 2019
- 1141
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Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13)Senior, Andrew W. / Evans, Richard / Jumper, John / Kirkpatrick, James / Sifre, Laurent / Green, Tim / Qin, Chongli / Žídek, Augustin / Nelson, Alexander W. R. / Bridgland, Alex et al. | 2019
- 1149
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Deep‐learning contact‐map guided protein structure prediction in CASP13Zheng, Wei / Li, Yang / Zhang, Chengxin / Pearce, Robin / Mortuza, S. M. / Zhang, Yang et al. | 2019
- 1165
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Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13Hou, Jie / Wu, Tianqi / Cao, Renzhi / Cheng, Jianlin et al. | 2019
- 1179
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Recent developments in deep learning applied to protein structure predictionKandathil, Shaun M. / Greener, Joe G. / Jones, David T. et al. | 2019
- 1190
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Assessment of protein assembly prediction in CASP13Guzenko, Dmytro / Lafita, Aleix / Monastyrskyy, Bohdan / Kryshtafovych, Andriy / Duarte, Jose M. et al. | 2019
- 1200
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Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experimentLensink, Marc F. / Brysbaert, Guillaume / Nadzirin, Nurul / Velankar, Sameer / Chaleil, Raphaël A. G. / Gerguri, Tereza / Bates, Paul A. / Laine, Elodie / Carbone, Alessandra / Grudinin, Sergei et al. | 2019
- 1222
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Structural modeling of protein complexes: Current capabilities and challengesDapkūnas, Justas / Olechnovič, Kliment / Venclovas, Česlovas et al. | 2019
- 1233
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Prediction of protein oligomer structures using GALAXY in CASP13Baek, Minkyung / Park, Taeyong / Woo, Hyeonuk / Seok, Chaok et al. | 2019
- 1241
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Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in dockingPorter, Kathryn A. / Padhorny, Dzmitry / Desta, Israel / Ignatov, Mikhail / Beglov, Dmitri / Kotelnikov, Sergei / Sun, Zhuyezi / Alekseenko, Andrey / Anishchenko, Ivan / Cong, Qian et al. | 2019
- 1249
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Evaluation of model refinement in CASP13Read, Randy J. / Sammito, Massimo D. / Kryshtafovych, Andriy / Croll, Tristan I. et al. | 2019
- 1276
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High‐accuracy refinement using Rosetta in CASP13Park, Hahnbeom / Lee, Gyu Rie / Kim, David E. / Anishchenko, Ivan / Cong, Qian / Baker, David et al. | 2019
- 1283
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Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13Fajardo, J. Eduardo / Shrestha, Rojan / Gil, Nelson / Belsom, Adam / Crivelli, Silvia N. / Czaplewski, Cezary / Fidelis, Krzysztof / Grudinin, Sergei / Karasikov, Mikhail / Karczyńska, Agnieszka S. et al. | 2019
- 1298
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Small angle X‐ray scattering‐assisted protein structure prediction in CASP13 and emergence of solution structure differencesHura, Greg L. / Hodge, Curtis D. / Rosenberg, Daniel / Guzenko, Dmytro / Duarte, Jose M. / Monastyrskyy, Bohdan / Grudinin, Sergei / Kryshtafovych, Andriy / Tainer, John A. / Fidelis, Krzysztof et al. | 2019
- 1315
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Protein structure prediction assisted with sparse NMR data in CASP13Sala, Davide / Huang, Yuanpeng Janet / Cole, Casey A. / Snyder, David A. / Liu, Gaohua / Ishida, Yojiro / Swapna, G.V.T. / Brock, Kelly P. / Sander, Chris / Fidelis, Krzysztof et al. | 2019
- 1333
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NMR‐assisted protein structure prediction with MELDxMDRobertson, James C. / Nassar, Roy / Liu, Cong / Brini, Emiliano / Dill, Ken A. / Perez, Alberto et al. | 2019
- 1341
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Protein structure prediction using sparse NOE and RDC restraints with Rosetta in CASP13Kuenze, Georg / Meiler, Jens et al. | 2019
- 1351
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Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learningWon, Jonghun / Baek, Minkyung / Monastyrskyy, Bohdan / Kryshtafovych, Andriy / Seok, Chaok et al. | 2019
- 1361
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Estimation of model accuracy in CASP13Cheng, Jianlin / Choe, Myong‐Ho / Elofsson, Arne / Han, Kun‐Sop / Hou, Jie / Maghrabi, Ali H. A. / McGuffin, Liam J. / Menéndez‐Hurtado, David / Olechnovič, Kliment / Schwede, Torsten et al. | 2019
- 1378
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Introducing “best single template” models as reference baseline for the Continuous Automated Model Evaluation (CAMEO)Haas, Juergen / Gumienny, Rafal / Barbato, Alessandro / Ackermann, Flavio / Tauriello, Gerardo / Bertoni, Martino / Studer, Gabriel / Smolinski, Anna / Schwede, Torsten et al. | 2019
- 1388
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Issue Information ‐ Forthcoming| 2019
- C1
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Cover Image, Volume 87, Issue 12| 2019