Testing clustering strategies for metabarcoding‐based investigation of community–environment interactions (English)
- New search for: Xiong, Wei
- New search for: Zhan, Aibin
- New search for: Xiong, Wei
- New search for: Zhan, Aibin
In:
Molecular Ecology Resources
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18
, 6
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1326-1338
;
2018
- Article (Journal) / Electronic Resource
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Title:Testing clustering strategies for metabarcoding‐based investigation of community–environment interactions
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Contributors:Xiong, Wei ( author ) / Zhan, Aibin ( author )
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Published in:Molecular Ecology Resources ; 18, 6 ; 1326-1338
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Publisher:
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Publication date:2018-11-01
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Size:13 pages
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Keywords:
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Source:
Table of contents – Volume 18, Issue 6
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1185
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Ancient DNA: The quest for the bestGeigl, Eva‐Maria / Grange, Thierry et al. | 2018
- 1188
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How complete are “complete” genome assemblies?—An avian perspectivePeona, Valentina / Weissensteiner, Matthias H. / Suh, Alexander et al. | 2018
- 1196
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Optimized DNA sampling of ancient bones using Computed Tomography scansAlberti, Federica / Gonzalez, Javier / Paijmans, Johanna L. A. / Basler, Nikolas / Preick, Michaela / Henneberger, Kirstin / Trinks, Alexandra / Rabeder, Gernot / Conard, Nicholas J. / Münzel, Susanne C. et al. | 2018
- 1209
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Expressed exome capture sequencing: A method for cost‐effective exome sequencing for all organismsPuritz, Jonathan B. / Lotterhos, Katie E. et al. | 2018
- 1223
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Evaluation of redundancy analysis to identify signatures of local adaptationCapblancq, Thibaut / Luu, Keurcien / Blum, Michael G. B. / Bazin, Eric et al. | 2018
- 1234
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The hitchhiker's guide to single‐locus species delimitationDellicour, Simon / Flot, Jean‐François et al. | 2018
- 1247
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RPASE: Individual‐based allele‐specific expression detection without prior knowledge of haplotype phaseWang, Mi / Uebbing, Severin / Pawitan, Yudi / Scofield, Douglas G. et al. | 2018
- 1263
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A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq dataAndrews, Kimberly R. / Adams, Jennifer R. / Cassirer, E. Frances / Plowright, Raina K. / Gardner, Colby / Dwire, Maggie / Hohenlohe, Paul A. / Waits, Lisette P. et al. | 2018
- 1282
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Debugging diversity – a pan‐continental exploration of the potential of terrestrial blood‐feeding leeches as a vertebrate monitoring toolSchnell, Ida Bærholm / Bohmann, Kristine / Schultze, Sebastian E. / Richter, Stine R. / Murray, Dáithí C. / Sinding, Mikkel‐Holger S. / Bass, David / Cadle, John E. / Campbell, Mason J. / Dolch, Rainer et al. | 2018
- 1299
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Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of operational taxonomic units’ ecological profilesKeck, François / Vasselon, Valentin / Rimet, Frédéric / Bouchez, Agnès / Kahlert, Maria et al. | 2018
- 1310
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Reliably discriminating stock structure with genetic markers: Mixture models with robust and fast computationFoster, Scott D. / Feutry, Pierre / Grewe, Peter M. / Berry, Oliver / Hui, Francis K. C. / Davies, Campbell R. et al. | 2018
- 1326
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Testing clustering strategies for metabarcoding‐based investigation of community–environment interactionsXiong, Wei / Zhan, Aibin et al. | 2018
- 1339
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Measuring metagenome diversity and similarity with Hill numbersMa, Zhanshan (Sam) / Li, Lianwei et al. | 2018
- 1356
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Targeted resequencing of coding DNA sequences for SNP discovery in nonmodel speciesFörster, Daniel W. / Bull, James K. / Lenz, Dorina / Autenrieth, Marijke / Paijmans, Johanna L. A. / Kraus, Robert H. S. / Nowak, Carsten / Bayerl, Helmut / Kuehn, Ralph / Saveljev, Alexander P. et al. | 2018
- 1374
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Application of a novel molecular method to age free‐living wild Bechstein's batsWright, Patrick G. R. / Mathews, Fiona / Schofield, Henry / Morris, Colin / Burrage, Joe / Smith, Adam / Dempster, Emma L. / Hamilton, Patrick B. et al. | 2018
- 1381
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Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoringCordier, Tristan / Forster, Dominik / Dufresne, Yoann / Martins, Catarina I. M. / Stoeck, Thorsten / Pawlowski, Jan et al. | 2018
- 1392
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Capture enrichment of aquatic environmental DNA: A first proof of conceptWilcox, Taylor M. / Zarn, Katherine E. / Piggott, Maxine P. / Young, Michael K. / McKelvey, Kevin S. / Schwartz, Michael K. et al. | 2018
- 1402
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SNP‐skimming: A fast approach to map loci generating quantitative variation in natural populationsWessinger, Carolyn A. / Kelly, John K. / Jiang, Peng / Rausher, Mark D. / Hileman, Lena C. et al. | 2018
- 1415
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Accuracy, limitations and cost efficiency of eDNA‐based community survey in tropical frogsBálint, Miklós / Nowak, Carsten / Márton, Orsolya / Pauls, Steffen U. / Wittwer, Claudia / Aramayo, José Luis / Schulze, Arne / Chambert, Thierry / Cocchiararo, Berardino / Jansen, Martin et al. | 2018
- 1427
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Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidyShan, Shengchen / Mavrodiev, Evgeny V. / Li, Riqing / Zhang, Zhengzhi / Hauser, Bernard A. / Soltis, Pamela S. / Soltis, Douglas E. / Yang, Bing et al. | 2018
- 1444
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Unveiling the RNA virosphere associated with marine microorganismsUrayama, Syun‐ichi / Takaki, Yoshihiro / Nishi, Shinro / Yoshida‐Takashima, Yukari / Deguchi, Shigeru / Takai, Ken / Nunoura, Takuro et al. | 2018
- 1456
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Comparison of environmental DNA and bulk‐sample metabarcoding using highly degenerate cytochrome c oxidase I primersMacher, Jan‐Niklas / Vivancos, Aurelién / Piggott, Jeremy J. / Centeno, Fernanda C. / Matthaei, Christoph D. / Leese, Florian et al. | 2018
- 1469
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High‐quality whole‐genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena)Autenrieth, Marijke / Hartmann, Stefanie / Lah, Ljerka / Roos, Anna / Dennis, Alice B. / Tiedemann, Ralph et al. | 2018
- 1482
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Reconstructing phylogeny from reduced‐representation genome sequencing data without assembly or alignmentFan, Huan / Ives, Anthony R. / Surget‐Groba, Yann et al. | 2018
- 1492
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OneTwoTree: An online tool for phylogeny reconstructionDrori, Michal / Rice, Anna / Einhorn, Moshe / Chay, Ofer / Glick, Lior / Mayrose, Itay et al. | 2018
- 1500
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Long‐read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environmentsHeeger, Felix / Bourne, Elizabeth C. / Baschien, Christiane / Yurkov, Andrey / Bunk, Boyke / Spröer, Cathrin / Overmann, Jörg / Mazzoni, Camila J. / Monaghan, Michael T. et al. | 2018