Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph (English)
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In:
Environmental Microbiology
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17
, 10
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4007-4018
;
2015
- Article (Journal) / Electronic Resource
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Title:Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph
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Contributors:Grob, Carolina ( author ) / Taubert, Martin ( author ) / Howat, Alexandra M. ( author ) / Burns, Oliver J. ( author ) / Dixon, Joanna L. ( author ) / Richnow, Hans H. ( author ) / Jehmlich, Nico ( author ) / von Bergen, Martin ( author ) / Chen, Yin ( author ) / Murrell, J. Colin ( author )
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Published in:Environmental Microbiology ; 17, 10 ; 4007-4018
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Publisher:
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Publication date:2015-10-01
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Size:12 pages
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 17, Issue 10
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 3429
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Farewell WilfredTimmis, Ken / Wagner, Michi / Ramos, Juan Luis / Jetten, Mike / Orphan, Victoria / Polz, Martin / Bonfante, Paola / Gilbert, Jack / Whitaker, Rachel / Wood, Tom et al. | 2015
- 3430
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Protective tunicate endosymbiont with extreme genome reductionKehr, Jan‐Christoph / Dittmann, Elke et al. | 2015
- 3433
-
The versatile nature of coral‐associated virusesBettarel, Yvan / Bouvier, Thierry / Nguyen, Hanh Kim / Thu, Pham The et al. | 2015
- 3440
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Metagenomic characterization of viral communities in corals: mining biological signal from methodological noiseWood‐Charlson, Elisha M. / Weynberg, Karen D. / Suttle, Curtis A. / Roux, Simon / van Oppen, Madeleine J. H. et al. | 2015
- 3450
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Adaptive and acclimative responses of cyanobacteria to far‐red lightGan, Fei / Bryant, Donald A. et al. | 2015
- 3466
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The transcriptional response of prokaryotes to phytoplankton‐derived dissolved organic matter in seawaterBeier, Sara / Rivers, Adam R. / Moran, Mary Ann / Obernosterer, Ingrid et al. | 2015
- 3481
-
Marine bacterioplankton community turnover within seasonally hypoxic waters of a subtropical sound: Devil's Hole, BermudaParsons, Rachel J. / Nelson, Craig E. / Carlson, Craig A. / Denman, Carmen C. / Andersson, Andreas J. / Kledzik, Andrew L. / Vergin, Kevin L. / McNally, Sean P. / Treusch, Alexander H. / Giovannoni, Stephen J. et al. | 2015
- 3500
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Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonizationBižić‐Ionescu, Mina / Zeder, Michael / Ionescu, Danny / Orlić, Sandi / Fuchs, Bernhard M. / Grossart, Hans‐Peter / Amann, Rudolf et al. | 2015
- 3515
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Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North SeaHahnke, Richard L. / Bennke, Christin M. / Fuchs, Bernhard M. / Mann, Alexander J. / Rhiel, Erhard / Teeling, Hanno / Amann, Rudolf / Harder, Jens et al. | 2015
- 3527
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Depth‐related distribution of a key gene of the tetraether lipid biosynthetic pathway in marine ThaumarchaeotaVillanueva, Laura / Schouten, Stefan / Sinninghe Damsté, Jaap S. et al. | 2015
- 3540
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Development and application of primers for the class Dehalococcoidia (phylum Chloroflexi) enables deep insights into diversity and stratification of subgroups in the marine subsurfaceWasmund, Kenneth / Algora, Camelia / Müller, Josefine / Krüger, Martin / Lloyd, Karen G. / Reinhardt, Richard / Adrian, Lorenz et al. | 2015
- 3557
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Validation of a new catalysed reporter deposition–fluorescence in situ hybridization probe for the accurate quantification of marine Bacteroidetes populationsAcinas, Silvia G. / Ferrera, Isabel / Sarmento, Hugo / Díez‐Vives, Cristina / Forn, Irene / Ruiz‐González, Clara / Cornejo‐Castillo, Francisco M. / Salazar, Guillem / Gasol, Josep M. et al. | 2015
- 3570
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A nanoscale secondary ion mass spectrometry study of dinoflagellate functional diversity in reef‐building coralsPernice, Mathieu / Dunn, Simon R. / Tonk, Linda / Dove, Sophie / Domart‐Coulon, Isabelle / Hoppe, Peter / Schintlmeister, Arno / Wagner, Michael / Meibom, Anders et al. | 2015
- 3581
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Bacterial community shift is induced by dynamic environmental parameters in a changing coastal ecosystem (northern Adriatic, northeastern Mediterranean Sea) – a 2‐year time‐series studyTinta, T. / Vojvoda, J. / Mozetič, P. / Talaber, I. / Vodopivec, M. / Malfatti, F. / Turk, V. et al. | 2015
- 3597
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Norwegian deep‐water coral reefs: cultivation and molecular analysis of planktonic microbial communitiesJensen, Sigmund / Lynch, Michael D. J. / Ray, Jessica L. / Neufeld, Josh D. / Hovland, Martin et al. | 2015
- 3610
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Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systemsSimon, Marianne / Jardillier, Ludwig / Deschamps, Philippe / Moreira, David / Restoux, Gwendal / Bertolino, Paola / López‐García, Purificación et al. | 2015
- 3628
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Cold‐active bacteriophages from the Baltic Sea ice have diverse genomes and virus–host interactionsSenčilo, Ana / Luhtanen, Anne‐Mari / Saarijärvi, Mikko / Bamford, Dennis H. / Roine, Elina et al. | 2015
- 3642
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Seasonal assemblages and short‐lived blooms in coastal north‐west Atlantic Ocean bacterioplanktonEl‐Swais, Heba / Dunn, Katherine A. / Bielawski, Joseph P. / Li, William K. W. / Walsh, David A. et al. | 2015
- 3662
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Response of intertidal benthic microalgal biofilms to a coupled light–temperature stress: evidence for latitudinal adaptation along the Atlantic coast of Southern EuropeLaviale, Martin / Barnett, Alexandre / Ezequiel, João / Lepetit, Bernard / Frankenbach, Silja / Méléder, Vona / Serôdio, João / Lavaud, Johann et al. | 2015
- 3678
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Changes in microbial communities in coastal sediments along natural CO2 gradients at a volcanic vent in Papua New GuineaRaulf, Felix F. / Fabricius, Katharina / Uthicke, Sven / de Beer, Dirk / Abed, Raeid M. M. / Ramette, Alban et al. | 2015
- 3692
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Cyanobacterial distributions along a physico‐chemical gradient in the Northeastern Pacific OceanSudek, Sebastian / Everroad, R. Craig / Gehman, Alyssa‐Lois M. / Smith, Jason M. / Poirier, Camille L. / Chavez, Francisco P. / Worden, Alexandra Z. et al. | 2015
- 3708
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A novel sister clade to the enterobacteria microviruses (family Microviridae) identified in methane seep sedimentsBryson, Samuel Joseph / Thurber, Andrew R. / Correa, Adrienne M. S. / Orphan, Victoria J. / Vega Thurber, Rebecca et al. | 2015
- 3722
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Depth shapes α‐ and β‐diversities of microbial eukaryotes in surficial sediments of coastal ecosystemsGong, Jun / Shi, Fei / Ma, Bin / Dong, Jun / Pachiadaki, Maria / Zhang, Xiaoli / Edgcomb, Virginia P. et al. | 2015
- 3722
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Depth shapes [alpha]- and [beta]-diversities of microbial eukaryotes in surficial sediments of coastal ecosystemsJun Gong et al. | 2015
- 3738
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Hydrogen export from intertidal cyanobacterial mats: sources, fluxes and the influence of community compositionHoffmann, Dörte / Maldonado, Juan / Wojciechowski, Martin F. / Garcia‐Pichel, Ferran et al. | 2015
- 3754
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Nitrogen‐fixing bacteria associated with copepods in coastal waters of the North Atlantic OceanScavotto, Rosemary E. / Dziallas, Claudia / Bentzon‐Tilia, Mikkel / Riemann, Lasse / Moisander, Pia H. et al. | 2015
- 3766
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The hidden seasonality of the rare biosphere in coastal marine bacterioplanktonAlonso‐Sáez, Laura / Díaz‐Pérez, Laura / Morán, Xosé Anxelu G. et al. | 2015
- 3781
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Functional distinctness in the exoproteomes of marine SynechococcusChristie‐Oleza, Joseph A. / Armengaud, Jean / Guerin, Philippe / Scanlan, David J. et al. | 2015
- 3795
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Physiological and genetic analyses reveal a mechanistic insight into the multifaceted lifestyles of Pseudoalteromonas sp. SM9913 adapted to the deep‐sea sedimentMi, Zi‐Hao / Yu, Zi‐Chao / Su, Hai‐Nan / Wang, Lei / Chen, Xiu‐Lan / Pang, Xiuhua / Qin, Qi‐Long / Xie, Bin‐Bin / Zhang, Xi‐Ying / Zhou, Bai‐Cheng et al. | 2015
- 3807
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Similar sponge‐associated bacteria can be acquired via both vertical and horizontal transmissionSipkema, Detmer / de Caralt, Sònia / Morillo, Jose A. / Al‐Soud, Waleed Abu / Sørensen, Søren J. / Smidt, Hauke / Uriz, María J. et al. | 2015
- 3822
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Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic OceansWietz, Matthias / Wemheuer, Bernd / Simon, Heike / Giebel, Helge‐Ansgar / Seibt, Maren A. / Daniel, Rolf / Brinkhoff, Thorsten / Simon, Meinhard et al. | 2015
- 3832
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Microbial and sponge loops modify fish production in phase‐shifting coral reefsSilveira, Cynthia B. / Silva‐Lima, Arthur W. / Francini‐Filho, Ronaldo B. / Marques, Jomar S.M. / Almeida, Marcelo G. / Thompson, Cristiane C. / Rezende, Carlos E. / Paranhos, Rodolfo / Moura, Rodrigo L. / Salomon, Paulo S. et al. | 2015
- 3847
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Archaeal enrichment in the hypoxic zone in the northern Gulf of MexicoGillies, Lauren E. / Thrash, J. Cameron / deRada, Sergio / Rabalais, Nancy N. / Mason, Olivia U. et al. | 2015
- 3857
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Different utilization of alginate and other algal polysaccharides by marine Alteromonas macleodii ecotypesNeumann, Anna M. / Balmonte, John P. / Berger, Martine / Giebel, Helge‐Ansgar / Arnosti, Carol / Voget, Sonja / Simon, Meinhard / Brinkhoff, Thorsten / Wietz, Matthias et al. | 2015
- 3869
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Physicochemical control of bacterial and protist community composition and diversity in Antarctic sea iceTorstensson, Anders / Dinasquet, Julie / Chierici, Melissa / Fransson, Agneta / Riemann, Lasse / Wulff, Angela et al. | 2015
- 3882
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Melting glacier impacts community structure of Bacteria, Archaea and Fungi in a Chilean Patagonia fjordGutiérrez, Marcelo H. / Galand, Pierre E. / Moffat, Carlos / Pantoja, Silvio et al. | 2015
- 3898
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Bacterial biogeography in the coastal waters of northern Zhejiang, East China Sea is highly controlled by spatially structured environmental gradientsWang, Kai / Ye, Xiansen / Chen, Heping / Zhao, Qunfen / Hu, Changju / He, Jiaying / Qian, Yunxia / Xiong, Jinbo / Zhu, Jianlin / Zhang, Demin et al. | 2015
- 3914
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Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua)Bakke, Ingrid / Coward, Eivind / Andersen, Tom / Vadstein, Olav et al. | 2015
- 3925
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Extracellular haem peroxidases mediate Mn(II) oxidation in a marine Roseobacter bacterium via superoxide productionAndeer, Peter F. / Learman, Deric R. / McIlvin, Matt / Dunn, James A. / Hansel, Colleen M. et al. | 2015
- 3937
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XoxF encoding an alternative methanol dehydrogenase is widespread in coastal marine environmentsTaubert, Martin / Grob, Carolina / Howat, Alexandra M. / Burns, Oliver J. / Dixon, Joanna L. / Chen, Yin / Murrell, J. Colin et al. | 2015
- 3949
-
Release of ecologically relevant metabolites by the cyanobacterium Synechococcus elongatus CCMP 1631Fiore, Cara L. / Longnecker, Krista / Kido Soule, Melissa C. / Kujawinski, Elizabeth B. et al. | 2015
- 3964
-
Identification and analysis of the bacterial endosymbiont specialized for production of the chemotherapeutic natural product ET‐743Schofield, Michael M. / Jain, Sunit / Porat, Daphne / Dick, Gregory J. / Sherman, David H. et al. | 2015
- 3976
-
Comparative proteomics reveals highly and differentially expressed proteins in field‐collected and laboratory‐cultured blooming cells of the diatom Skeletonema costatumZhang, Hao / Wang, Da‐Zhi / Xie, Zhang‐Xian / Zhang, Shu‐Fei / Wang, Ming‐Hua / Lin, Lin et al. | 2015
- 3992
-
Variable phosphorus uptake rates and allocation across microbial groups in the oligotrophic Gulf of MexicoPopendorf, Kimberly J. / Duhamel, Solange et al. | 2015
- 4007
-
Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotrophGrob, Carolina / Taubert, Martin / Howat, Alexandra M. / Burns, Oliver J. / Dixon, Joanna L. / Richnow, Hans H. / Jehmlich, Nico / von Bergen, Martin / Chen, Yin / Murrell, J. Colin et al. | 2015
- 4019
-
Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome of Marinovum algicola DG898 exemplify functional compartmentalizationFrank, Oliver / Göker, Markus / Pradella, Silke / Petersen, Jörn et al. | 2015
- 4035
-
Marine protist diversity in European coastal waters and sediments as revealed by high‐throughput sequencingMassana, Ramon / Gobet, Angélique / Audic, Stéphane / Bass, David / Bittner, Lucie / Boutte, Christophe / Chambouvet, Aurélie / Christen, Richard / Claverie, Jean‐Michel / Decelle, Johan et al. | 2015
- 4050
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Acclimation of Emiliania huxleyi (1516) to nutrient limitation involves precise modification of the proteome to scavenge alternative sources of N and PMcKew, Boyd A. / Metodieva, Gergana / Raines, Christine A. / Metodiev, Metodi V. / Geider, Richard J. et al. | 2015
- 4063
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Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep‐sea hydrothermal vent biofilmStokke, Runar / Dahle, Håkon / Roalkvam, Irene / Wissuwa, Juliane / Daae, Frida Lise / Tooming‐Klunderud, Ave / Thorseth, Ingunn H. / Pedersen, Rolf B. / Steen, Ida Helene et al. | 2015
- 4078
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Continental‐scale variation in seaweed host‐associated bacterial communities is a function of host condition, not geographyMarzinelli, Ezequiel M. / Campbell, Alexandra H. / Zozaya Valdes, Enrique / Vergés, Adriana / Nielsen, Shaun / Wernberg, Thomas / de Bettignies, Thibaut / Bennett, Scott / Caporaso, J. Gregory / Thomas, Torsten et al. | 2015
- 4089
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Synchronized dynamics of bacterial niche‐specific functions during biofilm development in a cold seep brine poolZhang, Weipeng / Wang, Yong / Bougouffa, Salim / Tian, Renmao / Cao, Huiluo / Li, Yongxin / Cai, Lin / Wong, Yue Him / Zhang, Gen / Zhou, Guowei et al. | 2015
- 4105
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Enhanced salinities, as a proxy of seawater desalination discharges, impact coastal microbial communities of the eastern Mediterranean SeaBelkin, Natalia / Rahav, Eyal / Elifantz, Hila / Kress, Nurit / Berman‐Frank, Ilana et al. | 2015
- 4121
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Microenvironment and phylogenetic diversity of Prochloron inhabiting the surface of crustose didemnid ascidiansNielsen, Daniel A. / Pernice, Mathieu / Schliep, Martin / Sablok, Gaurav / Jeffries, Thomas C. / Kühl, Michael / Wangpraseurt, Daniel / Ralph, Peter J. / Larkum, Anthony W. D. et al. | 2015
- 4133
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Seasonality in molecular and cytometric diversity of marine bacterioplankton: the re‐shuffling of bacterial taxa by vertical mixingGarcía, Francisca C. / Alonso‐Sáez, Laura / Morán, Xosé Anxelu G. / López‐Urrutia, Ángel et al. | 2015
- 4143
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Plant pathogenic microorganismsWackett, Lawrence P. et al. | 2015
- 4143
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Plant pathogenic microorganisms: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiologyWackett, Lawrence P et al. | 2015