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Trimmomatic: a flexible trimmer for Illumina sequence data
Oxford University Press | 2014|Publisher: Oxford University Press -
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Oxford University Press | 2015|Publisher: Oxford University Press -
Prokka: rapid prokaryotic genome annotation
Oxford University Press | 2014|Publisher: Oxford University Press -
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Oxford University Press | 2015|Publisher: Oxford University Press -
2016 Guidelines of the American Society of Mammalogists for the use of wild mammals in research and education
Oxford University Press | 2016|Publisher: Oxford University Press -
The Sequence Alignment/Map format and SAMtools
Oxford University Press | 2009|Publisher: Oxford University Press -
STAMP: statistical analysis of taxonomic and functional profiles
Oxford University Press | 2014|Publisher: Oxford University Press -
Roary: rapid large-scale prokaryote pan genome analysis
Oxford University Press | 2015|Publisher: Oxford University Press -
NCBI GEO: archive for functional genomics data sets--update
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
Oxford University Press | 2015|Publisher: Oxford University Press -
Symbol Nomenclature for Graphical Representations of Glycans
Oxford University Press | 2015|Publisher: Oxford University Press -
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
Oxford University Press | 2014|Publisher: Oxford University Press -
Primer3--new capabilities and interfaces
Free accessOxford University Press | 2012|Publisher: Oxford University Press -
Chronic Inflammation (Inflammaging) and Its Potential Contribution to Age-Associated Diseases
Oxford University Press | 2014|Publisher: Oxford University Press -
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
Oxford University Press | 2015|Publisher: Oxford University Press -
Fast and accurate short read alignment with Burrows-Wheeler transform
Oxford University Press | 2009|Publisher: Oxford University Press -
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
Search and clustering orders of magnitude faster than BLAST
Oxford University Press | 2010|Publisher: Oxford University Press -
circlize implements and enhances circular visualization in R
Oxford University Press | 2014|Publisher: Oxford University Press -
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Free accessOxford University Press | 2012|Publisher: Oxford University Press -
UCHIME improves sensitivity and speed of chimera detection
Oxford University Press | 2011|Publisher: Oxford University Press -
The variant call format and VCFtools
Oxford University Press | 2011|Publisher: Oxford University Press -
Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data
Oxford University Press | 2015|Publisher: Oxford University Press -
FLASH: fast length adjustment of short reads to improve genome assemblies
Oxford University Press | 2011|Publisher: Oxford University Press -
Bandage: interactive visualization of de novo genome assemblies
Oxford University Press | 2015|Publisher: Oxford University Press -
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
GOplot: an R package for visually combining expression data with functional analysis
Oxford University Press | 2015|Publisher: Oxford University Press -
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
Free accessOxford University Press | 2010|Publisher: Oxford University Press -
Sambamba: fast processing of NGS alignment formats
Oxford University Press | 2015|Publisher: Oxford University Press -
LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants
Oxford University Press | 2015|Publisher: Oxford University Press -
dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
Oxford University Press | 2015|Publisher: Oxford University Press -
ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers
Oxford University Press | 2014|Publisher: Oxford University Press -
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
Oxford University Press | 2015|Publisher: Oxford University Press -
AliView: a fast and lightweight alignment viewer and editor for large datasets
Oxford University Press | 2014|Publisher: Oxford University Press -
Error filtering, pair assembly and error correction for next-generation sequencing reads
Oxford University Press | 2015|Publisher: Oxford University Press -
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
Oxford University Press | 2013|Publisher: Oxford University Press -
Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases
Oxford University Press | 2014|Publisher: Oxford University Press -
ChEMBL: a large-scale bioactivity database for drug discovery
Free accessOxford University Press | 2012|Publisher: Oxford University Press -
Everything flows : towards a processual philosophy of biology
Free accessTIBKAT | 2018|Publisher: Oxford University Press, Oxford -
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
Phytozome: a comparative platform for green plant genomics
Free accessOxford University Press | 2012|Publisher: Oxford University Press -
Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
Extracellular Vesicles: Composition, Biological Relevance, and Methods of Study
Oxford University Press | 2015|Publisher: Oxford University Press -
ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging
Oxford University Press | 2014|Publisher: Oxford University Press -
HMDB 3.0--The Human Metabolome Database in 2013
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach
Free accessOxford University Press | 2013|Publisher: Oxford University Press -
IBS: an illustrator for the presentation and visualization of biological sequences
Oxford University Press | 2015|Publisher: Oxford University Press
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