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Trimmomatic: a flexible trimmer for Illumina sequence data
Oxford University Press | 2014|Publisher: Oxford University Press -
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Oxford University Press | 2015|Publisher: Oxford University Press -
Prokka: rapid prokaryotic genome annotation
Oxford University Press | 2014|Publisher: Oxford University Press -
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Oxford University Press | 2015|Publisher: Oxford University Press -
The Sequence Alignment/Map format and SAMtools
Oxford University Press | 2009|Publisher: Oxford University Press -
STAMP: statistical analysis of taxonomic and functional profiles
Oxford University Press | 2014|Publisher: Oxford University Press -
Roary: rapid large-scale prokaryote pan genome analysis
Oxford University Press | 2015|Publisher: Oxford University Press -
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
Oxford University Press | 2015|Publisher: Oxford University Press -
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
Oxford University Press | 2014|Publisher: Oxford University Press -
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
Oxford University Press | 2015|Publisher: Oxford University Press -
Fast and accurate short read alignment with Burrows-Wheeler transform
Oxford University Press | 2009|Publisher: Oxford University Press -
Search and clustering orders of magnitude faster than BLAST
Oxford University Press | 2010|Publisher: Oxford University Press -
circlize implements and enhances circular visualization in R
Oxford University Press | 2014|Publisher: Oxford University Press -
UCHIME improves sensitivity and speed of chimera detection
Oxford University Press | 2011|Publisher: Oxford University Press -
The variant call format and VCFtools
Oxford University Press | 2011|Publisher: Oxford University Press -
Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data
Oxford University Press | 2015|Publisher: Oxford University Press -
FLASH: fast length adjustment of short reads to improve genome assemblies
Oxford University Press | 2011|Publisher: Oxford University Press -
Opportunities and challenges in developing risk prediction models with electronic health records data: a systematic review
Oxford University Press | 2017|Publisher: Oxford University Press -
Bandage: interactive visualization of de novo genome assemblies
Oxford University Press | 2015|Publisher: Oxford University Press -
GOplot: an R package for visually combining expression data with functional analysis
Oxford University Press | 2015|Publisher: Oxford University Press -
Sambamba: fast processing of NGS alignment formats
Oxford University Press | 2015|Publisher: Oxford University Press -
LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants
Oxford University Press | 2015|Publisher: Oxford University Press -
dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
Oxford University Press | 2015|Publisher: Oxford University Press -
ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers
Oxford University Press | 2014|Publisher: Oxford University Press -
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
Oxford University Press | 2015|Publisher: Oxford University Press -
AliView: a fast and lightweight alignment viewer and editor for large datasets
Oxford University Press | 2014|Publisher: Oxford University Press -
Error filtering, pair assembly and error correction for next-generation sequencing reads
Oxford University Press | 2015|Publisher: Oxford University Press -
Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases
Oxford University Press | 2014|Publisher: Oxford University Press -
ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging
Oxford University Press | 2014|Publisher: Oxford University Press -
IBS: an illustrator for the presentation and visualization of biological sequences
Oxford University Press | 2015|Publisher: Oxford University Press -
ASTRAL: genome-scale coalescent-based species tree estimation
Oxford University Press | 2014|Publisher: Oxford University Press -
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
Oxford University Press | 2009|Publisher: Oxford University Press -
m-Health adoption by healthcare professionals: a systematic review
Oxford University Press | 2016|Publisher: Oxford University Press -
Quartet Inference from SNP Data Under the Coalescent Model
Oxford University Press | 2014|Publisher: Oxford University Press -
YASARA View--molecular graphics for all devices--from smartphones to workstations
Oxford University Press | 2014|Publisher: Oxford University Press -
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
Oxford University Press | 2014|Publisher: Oxford University Press -
Convolutional neural network architectures for predicting DNA–protein binding
Free accessDSpace@MIT | 2016|Publisher: Oxford University Press -
Bayesian kernel machine regression for estimating the health effects of multi-pollutant mixtures
Oxford University Press | 2015|Publisher: Oxford University Press -
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Oxford University Press | 2014|Publisher: Oxford University Press -
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Oxford University Press | 2011|Publisher: Oxford University Press -
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
Oxford University Press | 2015|Publisher: Oxford University Press -
Diffusion maps for high-dimensional single-cell analysis of differentiation data
Oxford University Press | 2015|Publisher: Oxford University Press -
MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments
Oxford University Press | 2014|Publisher: Oxford University Press -
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees
Oxford University Press | 2014|Publisher: Oxford University Press -
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Oxford University Press | 2011|Publisher: Oxford University Press -
kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome
Oxford University Press | 2015|Publisher: Oxford University Press -
SMART on FHIR: a standards-based, interoperable apps platform for electronic health records
Oxford University Press | 2016|Publisher: Oxford University Press -
SAMBLASTER: fast duplicate marking and structural variant read extraction
Oxford University Press | 2014|Publisher: Oxford University Press -
Molecular signatures database (MSigDB) 3.0
Oxford University Press | 2011|Publisher: Oxford University Press -
The influence of social networking sites on health behavior change: a systematic review and meta-analysis
Oxford University Press | 2015|Publisher: Oxford University Press
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