HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time (English)
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In:
Research in computational molecular biology; RECOMB 2014
8394
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293-306
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2014
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ISBN:
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ISSN:
- Conference paper / Print
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Title:HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time
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Contributors:Shrestha, R. ( author ) / Hodzic, E. ( author ) / Yeung, J. ( author ) / Wang, K. ( author ) / Sauerwald, T. ( author ) / Dao, P. ( author ) / Anderson, S. ( author ) / Beltran, H. ( author ) / Rubin, M.A. ( author ) / Collins, C.C. ( author )
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Conference:Annual international conference; 18th, Research in computational molecular biology; RECOMB 2014 ; 2014 ; Pittsburgh, PA
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Published in:Research in computational molecular biology; RECOMB 2014 , 8394 ; 293-306LECTURE NOTES IN COMPUTER SCIENCE , 8394 ; 293-306
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Publisher:
- New search for: Springer
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Place of publication:Cham
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Publication date:2014-01-01
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Size:14 pages
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Remarks:Includes bibliographical references and index. Also issued online
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ISBN:
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ISSN:
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Type of media:Conference paper
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Type of material:Print
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Language:English
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Keywords:
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Source:
© Metadata Copyright the British Library Board and other contributors. All rights reserved.
Table of contents conference proceedings
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
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Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype TractsAguiar, D. / Morrow, E. / Istrail, S. et al. | 2014
- 18
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HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS DataBerger, E. / Yorukoglu, D. / Peng, J. / Berger, B. et al. | 2014
- 20
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Changepoint Analysis for Efficient Variant CallingBloniarz, A. / Talwalkar, A. / Terhorst, J. / Jordan, M.I. / Patterson, D. / Yu, B. / Song, Y.S. et al. | 2014
- 35
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On the Representation of de Bruijn GraphsChikhi, R. / Limasset, A. / Jackman, S. / Simpson, J.T. / Medvedev, P. et al. | 2014
- 56
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Exact Learning of RNA Energy Parameters from StructureChitsaz, H. / Aminisharifabad, M. et al. | 2014
- 69
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An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq DataFu, C.-P. / Jojic, V. / McMillan, L. et al. | 2014
- 85
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The Generating Function Approach for Peptide Identification in Spectral NetworksGuthals, A. / Boucher, C. / Bandeira, N. et al. | 2014
- 100
-
Decoding Coalescent Hidden Markov Models in Linear TimeHarris, K. / Sheehan, S. / Kamm, J.A. / Song, Y.S. et al. | 2014
- 115
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AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its ApplicationHoinka, J. / Berezhnoy, A. / Sauna, Z.E. / Gilboa, E. / Przytycka, T.M. et al. | 2014
- 129
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Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical ModelsKamisetty, H. / Ghosh, B. / Langmead, C.J. / Bailey-Kellogg, C. et al. | 2014
- 144
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On Sufficient Statistics of Least-Squares Superposition of Vector SetsKonagurthu, A.S. / Kasarapu, P. / Allison, L. / Collier, J.H. / Lesk, A.M. et al. | 2014
- 160
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IDBA-MTP: A Hybrid MetaTranscriptomic Assembler Based on Protein InformationLeung, H.C.M. / Yiu, S.M. / Chin, F.Y.L. et al. | 2014
- 173
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MRFalign: Protein Homology Detection through Alignment of Markov Random FieldsMa, J. / Wang, S. / Wang, Z. / Xu, J. et al. | 2014
- 175
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An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 BindingMahony, S. / Edwards, M.D. / Mazzoni, E.O. / Sherwood, R.I. / Kakumanu, A. / Morrison, C.A. / Wichterle, H. / Gifford, D.K. et al. | 2014
- 177
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PASTA: Ultra-Large Multiple Sequence AlignmentMirarab, S. / Nguyen, N. / Warnow, T. et al. | 2014
- 192
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Fast Flux Module Detection Using Matroid TheoryMuller, A.C. / Bruggeman, F.J. / Olivier, B.G. / Stougie, L. et al. | 2014
- 207
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Building a Pangenome Reference for a PopulationNguyen, N. / Hickey, G. / Zerbino, D.R. / Raney, B. / Earl, D. / Armstrong, J. / Haussler, D. / Paten, B. et al. | 2014
- 222
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CSAX: Characterizing Systematic Anomalies in eXpression DataNoto, K. / Brodley, C. / Majidi, S. / Bianchi, D.W. / Slonim, D.K. et al. | 2014
- 237
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WhatsHap: Haplotype Assembly for Future-Generation Sequencing ReadsPatterson, M. / Marschall, T. / Pisanti, N. / van Iersel, L. / Stougie, L. / Klau, G.W. / Schonhuth, A. et al. | 2014
- 250
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Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation DataRaphael, B.J. / Vandin, F. et al. | 2014
- 265
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dipSPAdes: Assembler for Highly Polymorphic Diploid GenomesSafonova, Y. / Bankevich, A. / Pevzner, P.A. et al. | 2014
- 280
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An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate GenesShao, M. / Lin, Y. / Moret, B. et al. | 2014
- 293
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HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting TimeShrestha, R. / Hodzic, E. / Yeung, J. / Wang, K. / Sauerwald, T. / Dao, P. / Anderson, S. / Beltran, H. / Rubin, M.A. / Collins, C.C. et al. | 2014
- 307
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Modeling Mutual Exclusivity of Cancer MutationsSzczurek, E. / Beerenwinkel, N. et al. | 2014
- 309
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Viral Quasispecies Assembly via Maximal Clique EnumerationTopfer, A. / Marschall, T. / Bull, R.A. / Luciani, F. / Schonhuth, A. / Beerenwinkel, N. et al. | 2014
- 311
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Correlated Protein Function Prediction via Maximization of Data-Knowledge ConsistencyWang, H. / Huang, H. / Ding, C. et al. | 2014
- 326
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Bayesian Multiple Protein Structure AlignmentWang, R. / Schmidler, S.C. et al. | 2014
- 340
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Gene-Gene Interactions Detection Using a Two-Stage ModelWang, Z. / Sul, J.-H. / Snir, S. / Lozano, J.A. / Eskin, E. et al. | 2014
- 356
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A Geometric Clustering Algorithm and Its Applications to Structural DataXu, S. / Zou, S. / Wang, L. et al. | 2014
- 371
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A Spatial-Aware Haplotype Copying Model with Applications to Genotype ImputationYang, W.-Y. / Hormozdiari, F. / Eskin, E. / Pasaniuc, B. et al. | 2014
- 385
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Traversing the k-mer Landscape of NGS Read Datasets for Quality Score SparsificationYu, Y.W. / Yorukoglu, D. / Berger, B. et al. | 2014
- 400
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Reconstructing Breakage Fusion Bridge Architectures Using Noisy Copy NumbersZakov, S. / Bafna, V. et al. | 2014
- 418
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Reconciliation with Non-binary Gene Trees RevisitedZheng, Y. / Zhang, L. et al. | 2014
- 433
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Learning Protein-DNA Interaction Landscapes by Integrating Experimental Data through Computational ModelsZhong, J. / Wasson, T. / Hartemink, A.J. et al. | 2014
- 448
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Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix CompletionZitnik, M. / Zupan, B. et al. | 2014